bgparsers package

Subpackages

• bgparsers.commands package
  • Subpackages
    • bgparsers.commands.tasks package
      • Submodules
      • bgparsers.commands.tasks.cat module
      • bgparsers.commands.tasks.count module
      • bgparsers.commands.tasks.preprocess module
      • bgparsers.commands.tasks.script module
      • Module contents
  • Submodules
  • bgparsers.commands.bgvariants module
  • Module contents
• bgparsers.readers package
  • Submodules
  • bgparsers.readers.common module
  • bgparsers.readers.elements module
  • bgparsers.readers.tsv module
  • bgparsers.readers.variants module
  • Module contents

Submodules

bgparsers.selector module

bgparsers.utils module

bgparsers.utils.chunkizator(iterable, size=1000)

Creates chunks from an iterable

Args:

iterable: size (int): elements in the chunk

Returns:

list. Chunk

bgparsers.utils.dequote(s)

If a string has single or double quotes around it, remove them. Make sure the pair of quotes match. If a matching pair of quotes is not found, return the string unchanged.

Module contents